RNA Analyzer

With this web application, you can search your RNA/DNA for several known RNA structures and retrieve general information about your sequence.

Please have a look at our tutorial on how to use our webserver.

RNA Analyzer3 is free and open to all users without login requirements.

Estimated time: 0 minutes

Tip 1: Press the Example button to fill a ready to submit example.

Tip 2: If your sequence is too long you can always divide it into several sequences as RNAanalyzer accepts upto 5 sequences at once.

OR Upload FASTA file:
Size limit: 1 mb

More examples

Motif Scans:

IRE tRNA scan miRNA scan RNA motif scan Protein Binding motif scan Trans-splicing structure Riboswitches

Check our Help page for more information on the motif scans.

Run Coding Prediction using Augustus

When Augustus is not chosen, coding potenial of the given sequence will be calculated by CPC2.

miRNA Target scan

can take a few minutes based on input sequence length

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